A system and method for transacting and manipulating a multi-sequence search
using
a biological data repository is described. A set of search query parameters specifying
a plurality of sequence sets is received. Each sequence set encodes structured
biological data values. A search queue is loaded with the search query parameters
formatted into a structured database query for each sequence set assigned by search
type. A search of the biological data repository is launched for each sequence
set. Search results generated responsive to each such structured database query
search are retrieved. The search results are received as sequence set information
organized and reformatted for each sequence set and search type. A plurality of
sequences are aligned using the search results based on one or more structured
biological data values having matching characteristics. The aligned sequences are
forwarded with matching characteristics indicators.