The invention relates to novel proteins with novel integrin and I domain activity
and nucleic acids encoding these proteins. The invention further relates to the
use of the novel proteins in the treatment of integrin related disorders.
TABLE 1
Computationally designed mutantsa
WT
ido1q
ido1r
ido2r
jlm2r
1ido
-1037
-1145
-1138
-1116
-678
1jlm
-1059
+82758
-840
-1000
-1086
139
I
—
—
V
—
153
M
—
—
A
—
156
F
L
W
—
—
157
V
—
—
I
—
160
V
I
—
—
—
199
V
I
I
I
—
215
I
L
L
—
V
219
V
—
—
—
I
223
F
—
—
—
L
238
V
F
F
I
I
239
V
L
L
L
—
240
I
L
L
—
—
259
A
L
L
—
—
269
I
L
—
—
—
271
V
F
—
—
—
287
I
V
V
V
—
299
V
A
I
I
—
308
I
V
—
—
—
aMutants are named according
to the structure that was stabilized (ido or jlm), the solvation potential used
(1 or 2) and the definition of core residues (q or r).
bThe lowest energy rotamer
configuration was calculated for each sequence in the lido structure, and cross-calculated
in the ljlm structure, using both solvent potentials; all 50 core residues were
used in order to make the q and r energies comparable. Results are shown for solvent
potential 1 and were similar for potential 2.
# A severe clash of the side-chain of F271 with the backbone caused the high
energy of the 1q sequence in the 1jlm structure; no movement of the backbone is
allowed by the design method.
|
|
|