The present invention provides a process for managing hydrogen in a hydrocarbon gas to liquid plant. The process includes passing a syngas feed stream produced by a partial oxidation reactor to a Fischer-Tropsch reactor, thereby converting the syngas to hydrocarbon liquids. The hydrogen management process further includes passing a second hydrogen rich stream produced by an auxiliary source to a hydrogen user such as an FT water stripper, an FT catalyst regeneration unit, and an FT product upgrading unit. The auxiliary source could be a process for converting hydrocarbons to syngas, a process for converting hydrocarbons to olefins, a process for converting hydrocarbons to aromatics, a process for catalytically dehydrogenating hydrocarbons, a process for catalytically cracking hydrocarbons, a process for refining petroleum, and a process for converting hydrocarbons to carbon filaments.