A watercraft battery control system monitors a battery charge. The system informs the watercraft operator when the battery charge is below a predetermined value. Alternatively, the system automatically controls engine operation by starting the engine or by increasing the speed of the engine to allow a generator to replenish the battery charge when the battery charge has fallen below a predetermined value. By informing the user of an inadequate battery charge, the user can start the engine an recharge the battery. Alternatively, the system automatically maintains the battery at a predetermined charge level to ensure safe and enjoyable watercraft operation.