Sigma factors are a unique family of essential proteins found in bacterial,
but not eukaryotic cells, which are responsible for recognition of promoter DNA
and delivery of the catalytic domain of RNA polymerase to a gene signaled to be
expressed. The present invention relates to methods for identifying agents that
are capable of inhibiting bacterial gene expression via inhibition of sigma factor
activity. In particular, the invention relates to the interaction of bacteriophage
T4 AsiA protein and the C-terminal DNA binding domain of sigma factor (the SR4
domain) and the use of the structural information derived from this interaction
to model, prepare and identify agents capable of binding and inhibiting sigma factor
activity. Moreover, the invention relates to the design of AsiA mimics, including
small organic molecules, peptides or proteins that binds SR4 and abrogates sigma
factor activity, or screening for AsiA mimics that show bacteriostatic or bacteriocidal properties.