The specificity of binding of a zinc finger to a triplet or quadruplet nucleotide
target subsite depends upon the location of the zinc finger in a multifinger protein
and, hence, upon the location of its target subsite within a larger target sequence.
The present disclosure provides zinc finger amino acid sequences for recognition
of triplet target subsites having the nucleotide G in the 5-most position
of the subsite, that have been optimized with respect to the location of the subsite
within the target site. Accordingly, the disclosure provides finger position-specific
amino acid sequences for the recognition of GNN target subsites. This allows the
construction of multi-finger zinc finger proteins with improved affinity and specificity
for their target sequences, as well as enhanced biological activity.