Some embodiments of the present invention provide a system and method suited for controlling the operation of an electrolyzer cell module. Specifically, some embodiments of the present invention provide a system and method that incorporates a call to an alarm recovery sequence into a safety system suited for use with an electrolyzer cell module, which is able to suspend the normal operations and initiate an alarm recovery sequence upon detecting that a corresponding alarm threshold has been violated. The safety system and method is then able to restart the normal operations if it is determined that the alarm recovery sequence was successful, meaning that the process and operating parameters that violated the particular alarm threshold have been brought back to within a safe operating range.