An optical coherence tomography (OCT) system including a polarizing splitter disposed to direct light in an interferometer such that the OCT detector operates in a noise-optimized regime. When scanning an eye, the system detector simultaneously produces a low-frequency component representing a scanning laser ophthalmoscope-like (SLO-like) image pixel and a high frequency component representing a two-dimensional (2D) OCT en face image pixel of each point. The SLO-like image is unchanging with depth, so that the pixels in each SLO-like image may be quickly realigned with the previous SLO-like image by consulting prominent image features (e.g., vessels) should lateral eye motion shift an OCT en face image during recording. Because of the pixel-to-pixel correspondence between the simultaneous OCT and SLO-like images, the OCT image pixels may be remapped on the fly according to the corresponding SLO-like image pixel remapping to create an undistorted 3D image data set for the scanned region.