Wireless configuration tools for communicating with and configuring wireless device systems. An illustrative tool makes use of a software defined radio (SDR) to communicate in multiple formats, modes, or frequencies, with multiple wireless device systems that may otherwise be incompatible. In some embodiments, the tool determines what type and how many wireless systems are to be configured prior to configuration of any of the systems. The tool may then adjust how each system is configured to reduce intra-system as well as inter-system interference. Methods for performing such functions are also included.