A method of improving the security of a QKD system is disclosed. The QKD system exchanges qubits between QKD stations, wherein the brief period of time surrounding the expected arrival time of a qubit at a modulator in a QKD station defines a gating interval. The method includes randomly activating the modulator in a QKD station both within the gating interval and outside of the gating interval, while recording those modulations made during the gating interval. Such continuous or near-continuous modulation prevents an eavesdropper from assuming that the modulations correspond directly to the modulation of a qubit. Thus, an eavesdropper (Eve) has the additional and daunting task of determining which modulations correspond to actual qubit modulations before she can begin to extract any information from detected modulation states of the modulator.