A magnetic resonance imaging (MRI) system includes an ECG detector for the patient object being imaged and an element for performing an MRI pulse sequence. An imaging unit defined by the pulse sequence is longer in temporal length than one heart beat represented by the EGG signal. An MR signal is acquired from the object in response to the pulse sequence and an MR image based on the acquired MR signal is produced. A plurality of divided MT pulses can be applied instead of the conventional single MT pulse. In this case, an SE-system pulse sequence having a shorter echo train spacing is used, to generate sounds by applying gradient pulses incorporated in an imaging pulse sequence so as to automatically instruct a patient to perform an intermittent breath hold during three-dimensional scanning.