A disk drive is disclosed comprising a disk having a plurality of tracks, wherein each track comprises a plurality of data sectors. The disk drive further comprises a plurality of heads, such as a top head and a bottom head. Control circuitry within the disk drive determines a head-switch preheat period used to format the disk. The head-switch preheat period is calibrated by selecting one of the heads to write a test pattern to the disk, and then preheating the selected head for a preheat period prior to reading the test pattern from the disk to generate a read signal. The head-switch preheat period is determined for the selected head in response to the read signal.