Provided are novel nucleotides, nucleoside, and their derivatives
described herein, that can be used in DNA sequencing technology and other
types of DNA analysis. In one embodiment, the nucleotide or nucleoside
with an unprotected 3'-OH group is derivatized at the nucleobase to
include a fluorescent dye attached via a linker to a photocleavable
terminating group. The photocleavable-fluorescent group is designed to
terminate DNA synthesis as well as be cleaved so that DNA oligomers can
be sequenced efficiently in a parallel format. The design of such rapidly
cleavable fluorescent groups on nucleotides and nucleosides can enhance
the speed and accuracy of sequencing of large oligomers of DNA in
parallel, to allow rapid whole genome sequencing, and the identification
of polymorphisms and other valuable genetic information, as well as
allowing further manipulation and analysis of nucleic acid molecules in
their native state following cleavage of the fluorescent group.