Systems and methods for graphically displaying statistical information relating to the operation of a quantum key distribution (QKD) system. The method includes exchanging quantum photons between first and second QKD stations for each combination of modulator states, collecting data on the number of quantum photon counts obtained in each of two detectors for each modulator state combination, defining a statistical region for each modulator state combination based on the collected data, and displaying the statistical regions on a graph having indicia indicating ideal locations for the statistical regions. The method also optionally includes adjusting the QKD system based on the graphically displayed information to optimize system performance.