A fuel cell system including a quartz crystal microbalance (QCM) concentration sensor, and in particular, comprising a bypass channel structure useful for installing a QCM concentration sensor to a fuel cell system. The fuel cell system includes a fuel cell stack generating electric energy by an electrochemical reaction of a hydrogen-containing fuel and an oxidant, a fuel cell including a fuel supplying unit supplying the hydrogen-containing fuel to the fuel cell stack, a QCM concentration sensing unit for measuring the concentration of a fluid in the fuel cell, and a drive controlling unit for controlling the operation of the fuel cell according to an output of the QCM concentration sensing unit.