The present invention provides for novel reagents whose fluorescence
changes upon cleavage or a change in conformation of a backbone. The
reagents comprise a backbone (e.g. nucleic acid, polypeptide, etc.)
joining two fluorophores of the same species whereby the fluorophores
form an H-dimer resulting in quenching of the fluorescence of the
fluorophores. When the backbone is cleaved or changes conformation, the
fluorophores are separated, no longer forming an H-type dimer, and are
de-quenched thereby providing a detectable signal. The use of a single
fluorophore rather than an "acceptor-donor" fluoresecence resonance
energy transfer system offers synthesis and performance advantages.