It is an object of the present invention to improve analysis accuracy of manufacture data with missing values. First, an analysis target explanatory variable is selected. The manufacture data acquired from each process is separated into a set with missing values and a set without missing values. An evaluation value for evaluating the influence of the explanatory variable on the objective variable is calculated from the manufacture data in the set with missing value and the set without missing values. The manufacture data is analyzed by matching the calculated evaluation value with a reference.