The specificity of binding of a zinc finger to a triplet or quadruplet
nucleotide target subsite depends upon the location of the zinc finger in
a multifinger protein and, hence, upon the location of its target subsite
within a larger target sequence. The present disclosure provides zinc
finger amino acid sequences for recognition of triplet target subsites
having the nucleotide G in the 5'-most position of the subsite, that have
been optimized with respect to the location of the subsite within the
target site. Accordingly, the disclosure provides finger
position-specific amino acid sequences for the recognition of GNN target
subsites. This allows the construction of multi-finger zinc finger
proteins with improved affinity and specificity for their target
sequences, as well as enhanced biological activity.