The invention provides dyes, biosensors, and methods for using the dyes
and biosensors to detect selected target molecules. The biosensors have a
binding domain and a dye, or a dye which is attached directly to the
target of interest. Binding domains contemplated by the invention include
biomolecules or fragments of biomolecules that interact with target
molecules of interest and can be specific to a given conformational state
or covalent modification of the molecule (e.g. phosphorylation). In one
embodiment, the binding domain of a biosensor is a single chain variable
fragment (scFv) with a dye of the invention linked to a CDR3 region. The
invention also provides environmentally sensitive dyes useful for
detecting changes in the binding, conformational change, or
posttranslational modification of the selected target.