In the processing of mass-produced items that include a three-dimensional code formed therein, a system is provided for automating certain post-manufacturing processing steps. The system includes a printing mechanism that applies ink to the three-dimensional code to form an optically-readable code; a code-reading mechanism that reads the optically readable code and transmits a signal indicative of the code to a database that may be employed for tracking the processed items; and a transport mechanism that moves the items from the printing mechanism to the code-reading mechanism. In one embodiment, the system also includes a liquid agent application mechanism that applies a liquid agent to the items after the optically-readable code is formed. The transport mechanism includes a plurality of pallets on which the items are placed for processing, and that is operable to move the pallets sequentially to the several processing mechanisms.