An apparatus and method for uplink transmission in a wireless communication system are provided. The method comprises detecting an expiry of a time alignment timer in a MAC (Medium Access Control) layer, the time alignment timer being used to control how long the UE is considered uplink time aligned, notifying a release of PUCCH (Physical Uplink Control Channel) resources from the MAC layer to a RRC (Radio Resource Control) layer when the expiry of the time alignment timer is detected and keeping a part of the PUCCH (Physical Uplink Control Channel) resources in the RRC layer.