A method for reducing electromagnetic emissions in an electronic device having a multiple micro-controllers includes identifying the number of micro-controllers installed in the electronic device. An operating frequency range of the electronic device is determined based on the operating frequency range of each micro-controller. A frequency spacing for each micro-controller within the operating frequency range of the electronic device is then calculated, and an operating frequency is assigned to each micro-controller. The operating frequency of each micro-controller is separated from the operating frequency of each other micro-controller by at least the frequency spacing. Then, the operating frequency of each micro-controller is set at the assigned operating frequency.