A fuel cell system includes a fuel cell having a stack composed of stacked cells that generate electrical power from anode gas and cathode gas; a cell voltage measuring device connected to the cells to measure the voltages of the cells, the cell voltage measuring device outputting a first predetermined value as a measurement value when the voltage of the cell being measured is at or below a detection limit; a stack voltage measuring device connected to the stack that measures the voltage of the stack; and a control unit that restricts the current flowing though the fuel cell when the difference between the sum of the individual voltages of the cells measured by the cell voltage measuring device and the voltage of the stack measured by the stack voltage measuring device exceeds a second predetermined value.