A method and device, for use in an operating theater just prior to implantation, for selectively applying a medical coating to an implantable medical device. Disclosed is a device for use with a stent deployed on a catheter balloon configured to apply a medical coating of a desired thickness to the surface of the stent only. A drop-on-demand inkjet printing system in association with an optical scanning device is described. The device is further configured to apply a plurality of layered coats, each layered coat being of a different coating material, and if appropriate, different thickness and to coat a portion of the medical device as a function of its geometric configuration. The coating is applied by moving an applicator over the device in a path that is independent of the deposited coating pattern.